reactome web-based tool Search Results


deidentified centralized web-based survey tool  (SurveyMonkey Inc)
90
SurveyMonkey Inc deidentified centralized web-based survey tool
Deidentified Centralized Web Based Survey Tool, supplied by SurveyMonkey Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/deidentified centralized web-based survey tool/product/SurveyMonkey Inc
Average 90 stars, based on 1 article reviews
deidentified centralized web-based survey tool - by Bioz Stars, 2026-06
90/100 stars
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webbased readability test tool  (WebpageFX Inc)
90
WebpageFX Inc webbased readability test tool
Webbased Readability Test Tool, supplied by WebpageFX Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/webbased readability test tool/product/WebpageFX Inc
Average 90 stars, based on 1 article reviews
webbased readability test tool - by Bioz Stars, 2026-06
90/100 stars
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reactome web-based tool  (Broad Institute Inc)
90
Broad Institute Inc reactome web-based tool
Reactome Web Based Tool, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/reactome web-based tool/product/Broad Institute Inc
Average 90 stars, based on 1 article reviews
reactome web-based tool - by Bioz Stars, 2026-06
90/100 stars
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web-based operating system  (OpenMRS LLC)
90
OpenMRS LLC web-based operating system
Web Based Operating System, supplied by OpenMRS LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/web-based operating system/product/OpenMRS LLC
Average 90 stars, based on 1 article reviews
web-based operating system - by Bioz Stars, 2026-06
90/100 stars
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web-based tool  (Johns Hopkins HealthCare)
90
Johns Hopkins HealthCare web-based tool
Web Based Tool, supplied by Johns Hopkins HealthCare, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/web-based tool/product/Johns Hopkins HealthCare
Average 90 stars, based on 1 article reviews
web-based tool - by Bioz Stars, 2026-06
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webgestalt  (GeneLAB GmbH)
90
GeneLAB GmbH webgestalt
Webgestalt, supplied by GeneLAB GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/webgestalt/product/GeneLAB GmbH
Average 90 stars, based on 1 article reviews
webgestalt - by Bioz Stars, 2026-06
90/100 stars
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local alignment search tool primer blast web based software  (Biotechnology Information)
86
Biotechnology Information local alignment search tool primer blast web based software
Local Alignment Search Tool Primer Blast Web Based Software, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/local alignment search tool primer blast web based software/product/Biotechnology Information
Average 86 stars, based on 1 article reviews
local alignment search tool primer blast web based software - by Bioz Stars, 2026-06
86/100 stars
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genease  (Epigenomics ag)
90
Epigenomics ag genease
<t>GENEASE</t> workflows: (a) GENEASE API used to retrieve gene, SNP, disease or CpG site information from local database. (b) Exploration module, begins with reading the input types from the explore screen. Local API used to extract information if the input is found and external database links are included in the final result. (c) Enrichment analysis module, starts with reading the gene/SNP lists from the analysis screen. Functional annotations are accessed and parsed on-the-fly and statistical tests are performed to test for enrichment. Multiple test correction procedures are employed and odds ratio is used to find enrichment/depletion. (d) Overlap analysis module firstly reads the gene/SNP sets supplied by the user. In case of direct overlap, intersections are found and overlap scores are computed directly. For enriched term overlap analysis, enrichment analysis module is used to retrieve the enriched terms in each of the sets and overlap is computed using them (Color version of this figure is available at Bioinformatics online.)
Genease, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/genease/product/Epigenomics ag
Average 90 stars, based on 1 article reviews
genease - by Bioz Stars, 2026-06
90/100 stars
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healthtrackertm platform  (HealthTracker Ltd)
90
HealthTracker Ltd healthtrackertm platform
<t>GENEASE</t> workflows: (a) GENEASE API used to retrieve gene, SNP, disease or CpG site information from local database. (b) Exploration module, begins with reading the input types from the explore screen. Local API used to extract information if the input is found and external database links are included in the final result. (c) Enrichment analysis module, starts with reading the gene/SNP lists from the analysis screen. Functional annotations are accessed and parsed on-the-fly and statistical tests are performed to test for enrichment. Multiple test correction procedures are employed and odds ratio is used to find enrichment/depletion. (d) Overlap analysis module firstly reads the gene/SNP sets supplied by the user. In case of direct overlap, intersections are found and overlap scores are computed directly. For enriched term overlap analysis, enrichment analysis module is used to retrieve the enriched terms in each of the sets and overlap is computed using them (Color version of this figure is available at Bioinformatics online.)
Healthtrackertm Platform, supplied by HealthTracker Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/healthtrackertm platform/product/HealthTracker Ltd
Average 90 stars, based on 1 article reviews
healthtrackertm platform - by Bioz Stars, 2026-06
90/100 stars
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prism v5.0 windows  (GraphPad Software Inc)
90
GraphPad Software Inc prism v5.0 windows
<t>GENEASE</t> workflows: (a) GENEASE API used to retrieve gene, SNP, disease or CpG site information from local database. (b) Exploration module, begins with reading the input types from the explore screen. Local API used to extract information if the input is found and external database links are included in the final result. (c) Enrichment analysis module, starts with reading the gene/SNP lists from the analysis screen. Functional annotations are accessed and parsed on-the-fly and statistical tests are performed to test for enrichment. Multiple test correction procedures are employed and odds ratio is used to find enrichment/depletion. (d) Overlap analysis module firstly reads the gene/SNP sets supplied by the user. In case of direct overlap, intersections are found and overlap scores are computed directly. For enriched term overlap analysis, enrichment analysis module is used to retrieve the enriched terms in each of the sets and overlap is computed using them (Color version of this figure is available at Bioinformatics online.)
Prism V5.0 Windows, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/prism v5.0 windows/product/GraphPad Software Inc
Average 90 stars, based on 1 article reviews
prism v5.0 windows - by Bioz Stars, 2026-06
90/100 stars
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graphpad prism v5.0  (GraphPad Software Inc)
90
GraphPad Software Inc graphpad prism v5.0
<t>GENEASE</t> workflows: (a) GENEASE API used to retrieve gene, SNP, disease or CpG site information from local database. (b) Exploration module, begins with reading the input types from the explore screen. Local API used to extract information if the input is found and external database links are included in the final result. (c) Enrichment analysis module, starts with reading the gene/SNP lists from the analysis screen. Functional annotations are accessed and parsed on-the-fly and statistical tests are performed to test for enrichment. Multiple test correction procedures are employed and odds ratio is used to find enrichment/depletion. (d) Overlap analysis module firstly reads the gene/SNP sets supplied by the user. In case of direct overlap, intersections are found and overlap scores are computed directly. For enriched term overlap analysis, enrichment analysis module is used to retrieve the enriched terms in each of the sets and overlap is computed using them (Color version of this figure is available at Bioinformatics online.)
Graphpad Prism V5.0, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/graphpad prism v5.0/product/GraphPad Software Inc
Average 90 stars, based on 1 article reviews
graphpad prism v5.0 - by Bioz Stars, 2026-06
90/100 stars
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overrepresentation analysis tool of consensuspathdb  (MolGen LLC)
90
MolGen LLC overrepresentation analysis tool of consensuspathdb
<t>GENEASE</t> workflows: (a) GENEASE API used to retrieve gene, SNP, disease or CpG site information from local database. (b) Exploration module, begins with reading the input types from the explore screen. Local API used to extract information if the input is found and external database links are included in the final result. (c) Enrichment analysis module, starts with reading the gene/SNP lists from the analysis screen. Functional annotations are accessed and parsed on-the-fly and statistical tests are performed to test for enrichment. Multiple test correction procedures are employed and odds ratio is used to find enrichment/depletion. (d) Overlap analysis module firstly reads the gene/SNP sets supplied by the user. In case of direct overlap, intersections are found and overlap scores are computed directly. For enriched term overlap analysis, enrichment analysis module is used to retrieve the enriched terms in each of the sets and overlap is computed using them (Color version of this figure is available at Bioinformatics online.)
Overrepresentation Analysis Tool Of Consensuspathdb, supplied by MolGen LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/overrepresentation analysis tool of consensuspathdb/product/MolGen LLC
Average 90 stars, based on 1 article reviews
overrepresentation analysis tool of consensuspathdb - by Bioz Stars, 2026-06
90/100 stars
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Image Search Results


GENEASE workflows: (a) GENEASE API used to retrieve gene, SNP, disease or CpG site information from local database. (b) Exploration module, begins with reading the input types from the explore screen. Local API used to extract information if the input is found and external database links are included in the final result. (c) Enrichment analysis module, starts with reading the gene/SNP lists from the analysis screen. Functional annotations are accessed and parsed on-the-fly and statistical tests are performed to test for enrichment. Multiple test correction procedures are employed and odds ratio is used to find enrichment/depletion. (d) Overlap analysis module firstly reads the gene/SNP sets supplied by the user. In case of direct overlap, intersections are found and overlap scores are computed directly. For enriched term overlap analysis, enrichment analysis module is used to retrieve the enriched terms in each of the sets and overlap is computed using them (Color version of this figure is available at Bioinformatics online.)

Journal: Bioinformatics

Article Title: GENEASE: real time bioinformatics tool for multi-omics and disease ontology exploration, analysis and visualization

doi: 10.1093/bioinformatics/bty182

Figure Lengend Snippet: GENEASE workflows: (a) GENEASE API used to retrieve gene, SNP, disease or CpG site information from local database. (b) Exploration module, begins with reading the input types from the explore screen. Local API used to extract information if the input is found and external database links are included in the final result. (c) Enrichment analysis module, starts with reading the gene/SNP lists from the analysis screen. Functional annotations are accessed and parsed on-the-fly and statistical tests are performed to test for enrichment. Multiple test correction procedures are employed and odds ratio is used to find enrichment/depletion. (d) Overlap analysis module firstly reads the gene/SNP sets supplied by the user. In case of direct overlap, intersections are found and overlap scores are computed directly. For enriched term overlap analysis, enrichment analysis module is used to retrieve the enriched terms in each of the sets and overlap is computed using them (Color version of this figure is available at Bioinformatics online.)

Article Snippet: Results In this study, we present GENEASE, a web-based one-stop bioinformatics tool designed to not only query and explore multi-omics and phenotype databases (e.g. GTEx, ClinVar, dbGaP, GWAS Catalog, ENCODE, Roadmap Epigenomics, KEGG, Reactome, Gene and Phenotype Ontology) in a single web interface but also to perform seamless post genome-wide association downstream functional and overlap analysis for non-coding regulatory variants.

Techniques: Functional Assay

GENEASE module procedures: (a) Step-by-step procedures followed in Exploration module including the conditional validation procedure. External references are downloaded and appended to external links to form dynamic requests. (b) All steps of enrichment module including the two-step validation. Annotation data is downloaded in run-time and input ‘hit’ counts processed for significance tests. (c) Summary of procedures followed in overlap analysis. Enrichment analysis performed before computing the overlaps in case of ‘enriched term overlap’ case (Color version of this figure is available at Bioinformatics online.)

Journal: Bioinformatics

Article Title: GENEASE: real time bioinformatics tool for multi-omics and disease ontology exploration, analysis and visualization

doi: 10.1093/bioinformatics/bty182

Figure Lengend Snippet: GENEASE module procedures: (a) Step-by-step procedures followed in Exploration module including the conditional validation procedure. External references are downloaded and appended to external links to form dynamic requests. (b) All steps of enrichment module including the two-step validation. Annotation data is downloaded in run-time and input ‘hit’ counts processed for significance tests. (c) Summary of procedures followed in overlap analysis. Enrichment analysis performed before computing the overlaps in case of ‘enriched term overlap’ case (Color version of this figure is available at Bioinformatics online.)

Article Snippet: Results In this study, we present GENEASE, a web-based one-stop bioinformatics tool designed to not only query and explore multi-omics and phenotype databases (e.g. GTEx, ClinVar, dbGaP, GWAS Catalog, ENCODE, Roadmap Epigenomics, KEGG, Reactome, Gene and Phenotype Ontology) in a single web interface but also to perform seamless post genome-wide association downstream functional and overlap analysis for non-coding regulatory variants.

Techniques: Biomarker Discovery